PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.358620.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 64aa    MW: 6954.1 Da    PI: 10.4002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.358620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26048.13.3e-152163345
          DUF260  3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkl 45
                    a Ck+lrr+C k+Cvla yfp ++p kf ++h +FGasn++kl
  Cucsa.358620.1 21 ATCKILRRRCDKKCVLAAYFPPSKPLKFTITHCIFGASNIIKL 63
                    78**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.1781864IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-142163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
AVASPSPSPT VQASVVVNLY ATCKILRRRC DKKCVLAAYF PPSKPLKFTI THCIFGASNI  60
IKLX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147299.11e-20PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK085e-17LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1S3CK125e-19A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRINGXP_004147299.15e-20(Cucumis sativus)
STRINGXP_004161319.15e-20(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-19LOB domain-containing protein 11