PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.359290.1

Common Name

Csa_7G447040, LOC101218066

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 298aa MW: 33441.3 Da PI: 7.3197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.359290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	173	211	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq Cucsa.359290.1 173 RKEKLVDRITALHQIVSPF-----GKTDTASVLSEAIGYIRFLQ 211 6667778899999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.868	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-5	171	215	No hit	No description
SuperFamily	SSF47459	2.49E-9	171	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-7	175	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MMAGNPNWWA MFPPSSFSSF ADHQPQSWSQ LLLGDEDRVL NQTQMSHYQP KKLENWEDQI 60 LNNNITSSSQ FEASTFVDNI IVKQQQLHSN NNILHPNTII SSHHTNKFLD FSSNTNNNNQ 120 DHNTNHLALR PAAPDPDHLS ESSKNQSIGS TGGACKKARV HPPSSSQPPL KVRKEKLVDR 180 ITALHQIVSP FGKTDTASVL SEAIGYIRFL QGQIEALSYP YLQSAPKDLR NSQPMGGEEM 240 MKNEDEKRLM KDLRSKGLCL VPLSCTHLVG ADHTNHNNIN NNNHHHNNIA LPYWSPF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN683263	1e-115	LN683263.1 Cucumis melo genomic scaffold, unanchored_scaffold01459.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141839.1	0.0	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	5e-41	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0A0K957	0.0	A0A0A0K957_CUCSA; Uncharacterized protein
STRING	XP_004141839.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.359290.1
Entrez Gene	101218066

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]