PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.359390.1
Common NameCsa_7G447150, LOC101217361
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 202aa    MW: 22328.2 Da    PI: 5.1052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.359390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-193383155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + ++GVr ++ +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++aa+++++g
  Cucsa.359390.1 33 PVFRGVRKRS-WGKWVSEIRQPRK---NSRIWLGTFPTPEMAARAHDAAALCIKG 83
                    579****888.**********966...4***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-133383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-303492IPR001471AP2/ERF domain
PROSITE profilePS5103222.7213491IPR001471AP2/ERF domain
SMARTSM003803.2E-333497IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-203491IPR016177DNA-binding domain
PRINTSPR003673.7E-103546IPR001471AP2/ERF domain
CDDcd000183.69E-203593No hitNo description
PRINTSPR003673.7E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAKPKNSNPQ NKTTSSLPTT PASKRPRDCN KHPVFRGVRK RSWGKWVSEI RQPRKNSRIW  60
LGTFPTPEMA ARAHDAAALC IKGDSAILNY PELADILPRP ASLMPQDVQA AAAKAAAMVH  120
LNSAGLPSEE EELSEIVELP NIEDDFCTES LNEFKLVTES WEWWESVAMP LAAEFGSGYF  180
SGQTTAEEIC YPSSFYGVLW D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1832921273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141836.11e-149PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0K6P81e-147A0A0A0K6P8_CUCSA; Uncharacterized protein
STRINGXP_004141836.11e-148(Cucumis sativus)
STRINGXP_004171299.11e-148(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2472433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]