PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.360310.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 610aa    MW: 67103.2 Da    PI: 5.4745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.360310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-08491539348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   Cucsa.360310.1 491 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 539
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987484543IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12486547IPR009057Homeodomain-like
SMARTSM007174.0E-8488541IPR001005SANT/Myb domain
CDDcd116609.00E-20490540No hitNo description
SuperFamilySSF466892.12E-15490549IPR009057Homeodomain-like
PfamPF002491.4E-5491539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
METEVGIVEN ERKIVESGAT QDGSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLLEDDKNEK VEDAGQIVGC IPKEGTLFGK PHVEVLNDTP GLLQSDTFEA AADYNARLEY  120
IEEVLQKVKQ EERLRLTCGS SNYASAYVNG DRKGSDEHGR LPVIDEKLQS NISLQEITHS  180
ISPSLKENHV NENGSLGDCL KHPDKSVESE SSDALCTTSN PDFSLLKGDV CLDNLSIREL  240
RECFKATFGR DTTVKDKSWL RRRIVMGLTN SCDIPVSSFI IKEGKFVEEI SPNVEGLSTA  300
PTAETLNIEC RVSPSTYSLE NKDLHHSEDM ELDHGSEGQH DERAAVKRVR KPTRRYIEEL  360
SEVESREYVQ KVVSMNKNTI SDSVSANSIA RPIKKVYSDG GRTVITRLDS LGGSGFQVPC  420
VSRVRRSRPR KDVVGLVFAL PEKDQSPSVT VTDEAEKNLE QKQTTSDNVS DDNTAVVSTT  480
KGGMRRKHHR AWTLVEVIKL VEGVSKCGAG KWSEIKKLSF SSYSYRTSVD LKDKWRNLLK  540
ASLVQTPVDE GISSRKHASI SIPAQVLLRV RELAEMHAQI PPSSHGQGKL GGGGVSGSMH  600
EMSSSTLCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424430RRSRPRK
2424431RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659628.10.0PREDICTED: uncharacterized protein LOC101203003 isoform X1
RefseqXP_011659629.10.0PREDICTED: uncharacterized protein LOC101203003 isoform X1
TrEMBLA0A0A0KCL90.0A0A0A0KCL9_CUCSA; Uncharacterized protein
STRINGXP_004141697.10.0(Cucumis sativus)
STRINGXP_004167883.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-57TRF-like 6