PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.361150.1
Common NameCsa_7G452960, LOC101212634
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 334aa    MW: 36316.3 Da    PI: 6.7393
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.361150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17228262135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  Cucsa.361150.1 228 CLHCQAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 262
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-8015314IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.4222258IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-17222272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14223259IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15223286No hitNo description
CDDcd002029.26E-13227278No hitNo description
PfamPF003204.6E-15228262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEVNKFLIGG YFDGGVGEFS PEMTKAADHF TIDDLLDFSN EDTIMTDGLF DNMAGSSTDS  60
STITAVDSCN SSVSGGDHHH FHGNIGSRSF DESQFSGDLC VPCDDLAELE WLSNFVEDSF  120
STEGKDLQVL NYLSNSHSTS KPQTPETSSS SALPASLSIP SNSSNNSPRF PAETPLPCKA  180
RSKRSRTAPC DWTTRLLHLL SPADPKPPKS SSSKKKDASN GDSSGRKCLH CQAEKTPQWR  240
TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFISAKHS NSHRKVLELR RQKELHIAQQ  300
QQFVNQGAIF GVTNGCDEYL ISHHMGPSVR HMI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141657.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A0A0KB380.0A0A0A0KB38_CUCSA; GATA transcription factor
STRINGXP_004141657.10.0(Cucumis sativus)
STRINGXP_004155956.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-75GATA transcription factor 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]