PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.363020.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 195aa    MW: 20663.4 Da    PI: 10.6018
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.363020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.24.3e-3621006101
             TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssgkaa 91 
                      +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++         ++ sss+++s      a 
  Cucsa.363020.1   2 PSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMsvngtlkipTTTSSSNQDS------AD 90 
                     689*********************************************************999994444333333221112222222......11 PP

             TCP  92 ksaakskksq 101
                     +sa k+++++
  Cucsa.363020.1  91 PSAVKKRRKR 100
                     1111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-313101IPR005333Transcription factor, TCP
PROSITE profilePS5136926.204458IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
RPSTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLER AEPAIIAATG  60
TGTIPAIAMS VNGTLKIPTT TSSSNQDSAD PSAVKKRRKR PANSDYVDVN DALSVSISAS  120
NVAGSSAVQQ AFPPGFVPVW AIPSNAIIPG AVFMMWAKGG PLGLQEEQQQ QQQQQQHHVV  180
VPSPHIPGSC MGGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100VKKRRKRP
29498KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145050.11e-107PREDICTED: transcription factor TCP9
SwissprotO646472e-70TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0A0KCU11e-106A0A0A0KCU1_CUCSA; Uncharacterized protein
STRINGXP_004145050.11e-107(Cucumis sativus)
STRINGXP_004168259.11e-107(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-59TCP family protein