PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.363680.1
Common NameCsa_6G057100, LOC101203313
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 450aa    MW: 51484.3 Da    PI: 6.7959
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.363680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.4e-24120216185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+++v++Li+a++++++++ ++            +kk++W+ +sk+++erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d
  Cucsa.363680.1 120 KWTDKMVKLLITAVSYIGDDIASDIdgggrrkcqiiQKKGKWKLISKVIAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCQVVENPALLD 214
                     7**************888888865233445556899*********************************************95699998888877 PP

        trihelix  84 ql 85 
                      +
  Cucsa.363680.1 215 VI 216
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-21118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF  60
SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK  120
WTDKMVKLLI TAVSYIGDDI ASDIDGGGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC  180
EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT EKDKDDVRKI LNSKQLFYEE  240
MCSYHNSNRL HLPHDPALQR SLQLAFRARD DHDNDEPRRH QNDDFDEHEP GETDEHDDYE  300
ENFVPHTDNR RSLGVLGGSV KRLKRGQDHD DAHACGNSLS PLDCNKSSHP HSQAQFTQAD  360
TAHLETESMK ASTSQKQWME LRLLQLEDQK LQIQVEMLEL EKQKFKWERF NKKKDRELEK  420
MRMVNERMKL ENERLALDLK QKQIGSGFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140967.10.0PREDICTED: uncharacterized protein LOC101203313
TrEMBLA0A0A0KBC20.0A0A0A0KBC2_CUCSA; Uncharacterized protein
STRINGXP_004160309.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-155sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]