PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.363680.2

Common Name

Csa_6G057100, LOC101203313

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 419aa MW: 47875.3 Da PI: 6.6501

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.363680.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.5e-08	120	175	1	45
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergfer 45 +Wt+++v++Li+a++++++++ ++ +kk++W+ +sk+++erg+++ Cucsa.363680.2 120 KWTDKMVKLLITAVSYIGDDIASDIdgggrrkcqiiQKKGKWKLISKVIAERGYQV 175 7************888888865233445556899****************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF 60 SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK 120 WTDKMVKLLI TAVSYIGDDI ASDIDGGGRR KCQIIQKKGK WKLISKVIAE RGYQVVENPA 180 LLDVIDYLTE KDKDDVRKIL NSKQLFYEEM CSYHNSNRLH LPHDPALQRS LQLAFRARDD 240 HDNDEPRRHQ NDDFDEHEPG ETDEHDDYEE NFVPHTDNRR SLGVLGGSVK RLKRGQDHDD 300 AHACGNSLSP LDCNKSSHPH SQAQFTQADT AHLETESMKA STSQKQWMEL RLLQLEDQKL 360 QIQVEMLELE KQKFKWERFN KKKDRELEKM RMVNERMKLE NERLALDLKQ KQIGSGFH*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF  60
SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK  120
WTDKMVKLLI TAVSYIGDDI ASDIDGGGRR KCQIIQKKGK WKLISKVIAE RGYQVVENPA  180
LLDVIDYLTE KDKDDVRKIL NSKQLFYEEM CSYHNSNRLH LPHDPALQRS LQLAFRARDD  240
HDNDEPRRHQ NDDFDEHEPG ETDEHDDYEE NFVPHTDNRR SLGVLGGSVK RLKRGQDHDD  300
AHACGNSLSP LDCNKSSHPH SQAQFTQADT AHLETESMKA STSQKQWMEL RLLQLEDQKL  360
QIQVEMLELE KQKFKWERFN KKKDRELEKM RMVNERMKLE NERLALDLKQ KQIGSGFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140967.1	0.0	PREDICTED: uncharacterized protein LOC101203313
Refseq	XP_008441519.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
TrEMBL	A0A0A0KBC2	0.0	A0A0A0KBC2_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3B4A7	0.0	A0A1S3B4A7_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
STRING	XP_004160309.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-125	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.363680.2
Entrez Gene	101203313

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]