PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.363740.2

Common Name

Csa_6G056520, LOC101223110

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 289aa MW: 31347.9 Da PI: 5.2383

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.363740.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.6	3e-14	232	277	3	48
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L e Cucsa.363740.2 232 AEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLRE 277 568**************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-9	230	288	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-12	232	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	232	277	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.66E-19	234	281	No hit	No description
SuperFamily	SSF57959	4.15E-10	235	280	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-12	235	278	No hit	No description
PROSITE pattern	PS00036	0	237	252	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MASSKLFPSS NSRNSDLSRG SSSSSSSSSA SLLKPQFLSN HSRNYDTPSR NPPPHTMTVD 60 GLLPNAFDSN PTESSILLDA QITLVDSPNP SSLHIDTTTP TTTNSSAVID SNHNSSSVAP 120 PPKTVDDVWR EIVSGERKEL KEEVANEIIT LEDFLMKSGA VPVEDVKFPQ TERLSGGIFS 180 FDPIPSTTFQ ALDKIEGSII GFANGVDLIG SGGSGGRGKR GRAALEPLDK AAEQRQRRMI 240 KNRESAARSR ERKQAYQVEL ESLAVRLEEE NEQLLREKVL LFSLDIHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140964.1	0.0	PREDICTED: G-box-binding factor 4
Swissprot	P42777	7e-46	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A0A0KBB4	0.0	A0A0A0KBB4_CUCSA; Uncharacterized protein
STRING	XP_004140964.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	3e-49	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.363740.2
Entrez Gene	101223110

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]