PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.364130.2
Common NameCsa_6G052680, LOC101217428
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 550aa    MW: 62028 Da    PI: 4.6125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.364130.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.6e-49171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtdeel+ +yLk k+ g+kl+l ++i+e+d+yk+eP +Lp + k+k+++++w+fFs+r+++y++ +r +rat+ gyWkatgkd+ + +
  Cucsa.364130.2  17 PPGFRFHPTDEELILYYLKFKICGRKLKL-DIIRETDVYKWEPDELPgQsKLKTGDRQWFFFSPREHRYPNASRLSRATRYGYWKATGKDRIIQC 110
                     8****************************.99**************963589999**************************************99 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfy grap+ge+tdWvmhey+l
  Cucsa.364130.2 111 -NSRNVGVKKTLVFYLGRAPNGERTDWVMHEYTL 143
                     .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5614166IPR003441NAC domain
PROSITE profilePS5100552.68916166IPR003441NAC domain
PfamPF023651.7E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSTVSSSRGL CDEGDWPPGF RFHPTDEELI LYYLKFKICG RKLKLDIIRE TDVYKWEPDE  60
LPGQSKLKTG DRQWFFFSPR EHRYPNASRL SRATRYGYWK ATGKDRIIQC NSRNVGVKKT  120
LVFYLGRAPN GERTDWVMHE YTLDEHELKR CKNVKDYYAL YKLYKKSGPG PKNGEQYGAP  180
FREEDWVDDA GCLEPQVKIV DEVDPVVCER DNGQIQISSE DIEEFMKQMV DDKEETASTM  240
IDDYTHEHIL PQLDKVCHFS VQPSDLNASF DFTQSGISQL QPFEAEVSSA PKDCEEEGNF  300
LEINDLVGPE PTPVANVNPL GNIPPSELDG LSELDLFHDA NMFLRDLGPI APETVLDPYL  360
NALDVDVADN SNGNWQYDPY QQIQKDNVFW KNNETENAFS IQSNGHSFNQ IPESHGQFVT  420
QSNLGVGYES VSSTAAGTRE IQSANDGGGS TSWFSSNLWA FVESIPTTPA SASENVNRAF  480
ERMSSFSRLR LNTLNTLNTN VAVRNPETGA RRRTGMNKGF FLFSILGVLC AILWVLIGNV  540
RLSGNFISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-441717218171NO APICAL MERISTEM PROTEIN
1ut4_B6e-441717218171NO APICAL MERISTEM PROTEIN
1ut7_A6e-441717218171NO APICAL MERISTEM PROTEIN
1ut7_B6e-441717218171NO APICAL MERISTEM PROTEIN
3swm_A6e-441717221174NAC domain-containing protein 19
3swm_B6e-441717221174NAC domain-containing protein 19
3swm_C6e-441717221174NAC domain-containing protein 19
3swm_D6e-441717221174NAC domain-containing protein 19
3swp_A6e-441717221174NAC domain-containing protein 19
3swp_B6e-441717221174NAC domain-containing protein 19
3swp_C6e-441717221174NAC domain-containing protein 19
3swp_D6e-441717221174NAC domain-containing protein 19
4dul_A6e-441717218171NAC domain-containing protein 19
4dul_B6e-441717218171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140940.10.0PREDICTED: uncharacterized protein LOC101217428
TrEMBLA0A0A0K9G30.0A0A0A0K9G3_CUCSA; Uncharacterized protein
STRINGXP_004140940.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-121NAC domain containing protein 17
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]