PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.364870.1
Common NameCsa_6G042990, LOC101207491
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 564aa    MW: 63410.6 Da    PI: 6.2226
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.364870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.51.6e-2758143186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+laL+++r++m++ +r++  k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le
  Cucsa.364870.1  58 RWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 143
                     8*********************************************************************9999999999999987 PP
2trihelix103.12.1e-32394479187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+eme +++++  k+ lWee+s++mr  g++rs+k+Ckekwen+nk++kk+k ++kkr +e+s+tcpyf+ql+a
  Cucsa.364870.1 394 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKR-PEDSKTCPYFHQLDA 479
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.36451115IPR017877Myb-like domain
SMARTSM007179.3E-555117IPR001005SANT/Myb domain
CDDcd122034.45E-2357122No hitNo description
PfamPF138373.9E-1757138No hitNo description
SMARTSM007171.1E-4391453IPR001005SANT/Myb domain
CDDcd122037.81E-27393458No hitNo description
PROSITE profilePS500907.538393451IPR017877Myb-like domain
PfamPF138378.9E-23394480No hitNo description
Gene3DG3DSA:1.10.10.602.1E-4394450IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDVIEPGEAA VTTEAGDAHE VGDSGGGGSG NGSNSGEEEK GSSLLLFEDG EKNFGGNRWP  60
RQETLALLKI RSDMDTIFRD ATHKAPLWDE VSRKLGELGF NRTPKKCKEK FENVYKYHKR  120
TKDVRSGKSD NSKKVYRFSD ELEAFDHPSS HHQNHMLLQS HHHHHPLPPT PTPPPPQVLP  180
STTPPPSYNP PATKTISSTV PSTMNNTTTN NTLPPKSSNN PLSNLPNMAA NVIFSSSTSS  240
STASEEDPFQ SSRRRRKKRK WSDFFLRLTK EVIEKQEGLQ LKFLEALERI ENQRKLRDEA  300
WRMKEMTRVN QEHEVLVQEM SMAAAKDAAV VAFLQKIAPF SSPPVPVPPP PTTTQPQNSE  360
NNGKLSSTIG SHVISMTTTN GKVMSSIIVG SPSRWPKGEV EALIRLRTEM EMKYQENGPK  420
GLLWEEISSA MRGLGYNRSS KRCKEKWENI NKYFKKVKYS NKKRPEDSKT CPYFHQLDAL  480
YREKEKSNMN FDINSQMEPL MVEPEQQWPP AFQPNSTQVM GNNLQRISGE ANQEEEEEDD  540
HGDDDDDVEE EDIGGSSSTD VED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258RRRKKR
2253259RRRKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656564.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-126TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A0KE500.0A0A0A0KE50_CUCSA; Uncharacterized protein
STRINGXP_004140984.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-62Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]