PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.364870.2
Common NameCsa_6G042990, LOC101207491
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 482aa    MW: 54900.6 Da    PI: 7.7984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.364870.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.62.5e-1114613986
        trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le
  Cucsa.364870.2 14 GELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 61
                    589*****************************9999999999999987 PP
2trihelix103.41.7e-32312397187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+eme +++++  k+ lWee+s++mr  g++rs+k+Ckekwen+nk++kk+k ++kkr +e+s+tcpyf+ql+a
  Cucsa.364870.2 312 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKR-PEDSKTCPYFHQLDA 397
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-4309371IPR001005SANT/Myb domain
CDDcd122034.96E-27311376No hitNo description
PROSITE profilePS500907.538311369IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4312368IPR009057Homeodomain-like
PfamPF138376.9E-23312398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MQLIKLHYGM KFQGELGFNR TPKKCKEKFE NVYKYHKRTK DVRSGKSDNS KKVYRFSDEL  60
EAFDHPSSHH QNHMLLQSHH HHHPLPPTPT PPPPQVLPST TPPPSYNPPA TKTISSTVPS  120
TMNNTTTNNT LPPKSSNNPL SNLPNMAANV IFSSSTSSST ASEEDPFQSS RRRRKKRKWS  180
DFFLRLTKEV IEKQEGLQLK FLEALERIEN QRKLRDEAWR MKEMTRVNQE HEVLVQEMSM  240
AAAKDAAVVA FLQKIAPFSS PPVPVPPPPT TTQPQNSENN GKLSSTIGSH VISMTTTNGK  300
VMSSIIVGSP SRWPKGEVEA LIRLRTEMEM KYQENGPKGL LWEEISSAMR GLGYNRSSKR  360
CKEKWENINK YFKKVKYSNK KRPEDSKTCP YFHQLDALYR EKEKSNMNFD INSQMEPLMV  420
EPEQQWPPAF QPNSTQVMGN NLQRISGEAN QEEEEEDDHG DDDDDVEEED IGGSSSTDVE  480
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RRRKKR
2171177RRRKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656564.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-100TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A0KE500.0A0A0A0KE50_CUCSA; Uncharacterized protein
STRINGXP_004140984.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-63Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]