PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.365420.1

Common Name

Csa_6G031950, LOC101210308

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 409aa MW: 45237.8 Da PI: 6.3797

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.365420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	121	163	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ + L + ++L Cucsa.365420.1 121 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQDL 163 56889*************************9877777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-6	119	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.393	121	165	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-7	122	163	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-7	123	166	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-8	125	160	No hit	No description
PROSITE pattern	PS00036	0	126	141	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.5E-30	207	280	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
GDDSGRFHTR FLPDIEELQQ SAVAIAAFHQ DDAVDLSSRQ ELMRLKRVAP PHSLAVTVAA 60 SSSLGNGSFE NWGESAMADN SQQTDTSTDI DNDERNQFQG AVHGALMAVD SMDQSKAKSA 120 DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRQRLAQLE QDLHRARQQG IFVASGVGDH 180 CASMAGNGAL AFDLDYARWL DEHQRLINDL RASANSQLGD DELRFLVDGV MTHYDELFRL 240 KSVGAKADVF HILSGMWKTP AERCFMWLGG FRSSELLKIV GSHLEPLTDQ QLMGICNLQQ 300 SSQQAEDALS QGIEALQQSL VETLSSASLG PASSGNVADY MGQMAIAMSK LTTLENFLHQ 360 ADLLRQQTLQ QMHRILTTRQ AARALLVISD YISRLRALSS LWLARPKE*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

GDDSGRFHTR FLPDIEELQQ SAVAIAAFHQ DDAVDLSSRQ ELMRLKRVAP PHSLAVTVAA  60
SSSLGNGSFE NWGESAMADN SQQTDTSTDI DNDERNQFQG AVHGALMAVD SMDQSKAKSA  120
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRQRLAQLE QDLHRARQQG IFVASGVGDH  180
CASMAGNGAL AFDLDYARWL DEHQRLINDL RASANSQLGD DELRFLVDGV MTHYDELFRL  240
KSVGAKADVF HILSGMWKTP AERCFMWLGG FRSSELLKIV GSHLEPLTDQ QLMGICNLQQ  300
SSQQAEDALS QGIEALQQSL VETLSSASLG PASSGNVADY MGQMAIAMSK LTTLENFLHQ  360
ADLLRQQTLQ QMHRILTTRQ AARALLVISD YISRLRALSS LWLARPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681817	1e-131	LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBank	LN713257	1e-131	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150536.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X2
Swissprot	Q41558	1e-174	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A0A0KDU2	0.0	A0A0A0KDU2_CUCSA; Uncharacterized protein
STRING	XP_004150536.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-150	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.365420.1
Entrez Gene	101210308

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]