PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.367070.1

Common Name

Csa_2G277060, LOC101215235

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 18159.1 Da PI: 10.1771

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.367070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68	9.2e-22	18	61	6	49
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ks+rqvtfskRr+g++ KA ELS+L +ae+a+++fsst+k+y++ Cucsa.367070.1 18 KSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61 89*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-28	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.315	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-24	6	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-19	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-21	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-19	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-19	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MKKSLGRQKI EIKKLNVKSR RQVTFSKRRA GLFNKAAELS ILSGAEIAIL VFSSTDKIYT 60 FGHPNVDFLI DRFLTSNFVP PKPVEAYLPL EELNRDLKDV TAEFETEKRR AERMRKTGGF 120 WWDEAMECMG IEDLKRFRSS LMELRGKVAE RVEELAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	1e-13	7	72	18	83	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	1e-13	7	72	18	83	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681913	0.0	LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149713.1	1e-111	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0A0LLS2	1e-110	A0A0A0LLS2_CUCSA; Mads box protein
STRING	XP_004163280.1	1e-111	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-38	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Cucsa.367070.1
Entrez Gene	101215235

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]