PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.371810.1

Common Name

Csa_4G434480

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 156aa MW: 17653.2 Da PI: 9.059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.371810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.8e-14	3	55	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr llP+ + + kKls ++ + YI +Lq Cucsa.371810.1 3 KKLSHNASERDRRKKINSLYSSLRALLPSsD---QMKKLSNPATISRILSYIPELQ 55 6789***********************66...9999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.437	2	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-12	3	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-14	3	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-15	3	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.16E-11	3	59	No hit	No description
SMART	SM00353	2.5E-10	8	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAKKLSHNAS ERDRRKKINS LYSSLRALLP SSDQMKKLSN PATISRILSY IPELQQQVEE 60 QMRKKEELMA AMVGQEVKND EEKKMKSAVS SSSSIISASR LSRHEMAIQI STDINGGQRN 120 YLSEILICLE EEGLLLLNAS SFESFDGKIF HNLHLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	85	RKKEELMAAMVGQEVKNDEEKKMK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681878	1e-164	LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBank	LN713262	1e-164	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144337.2	1e-107	PREDICTED: transcription factor bHLH100-like
TrEMBL	A0A0A0L0Z2	1e-106	A0A0A0L0Z2_CUCSA; Uncharacterized protein
STRING	XP_004144337.1	1e-108	(Cucumis sativus)
STRING	XP_004170119.1	1e-107	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	4e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.371810.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]