PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.373320.1
Common NameCsa_5G289630, LOC101218453
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 139aa    MW: 15289 Da    PI: 10.562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.373320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-061739123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+ksF++   L  H+r+H
  Cucsa.373320.1 17 HECSICKKSFKSAKALGGHMRVH 39
                    78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-61541No hitNo description
PfamPF139121.3E-91739IPR007087Zinc finger, C2H2
SMARTSM003556.8E-41739IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-51743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6161744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MNLEKQKSGG SHSTSWHECS ICKKSFKSAK ALGGHMRVHN TGEIDAKLKQ SSLGPISTDL  60
RWVVPSAIAE GSSRDRNRGK GKKVQELQLF SQKPSKLKKK QSDEKAGGQS SQHDNVDNEL  120
DLELRLGSNP KKSTPTIFX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140464.18e-97PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0A0KR102e-95A0A0A0KR10_CUCSA; Uncharacterized protein
STRINGXP_004156143.13e-95(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3153922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-10C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]