PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.374630.1

Common Name

Csa_4G159320

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 167aa MW: 18650.8 Da PI: 8.7632

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.374630.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	7.3e-33	61	118	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e+k++ +rkpylheSRh hA+rR+Rg+gGrF Cucsa.374630.1 61 EEPVYVNAKQYHGILRRRQSRAKAEVENKISRSQRKPYLHESRHLHAMRRERGCGGRF 118 69*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-34	59	121	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.139	60	121	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	62	118	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-24	63	85	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	65	85	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.2E-24	95	118	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MNNEHYHAST SQSELLTLSM TANTSYAYHD PSYGGLLSPF GFQTMHNSDY SRMALPLAMA 60 EEPVYVNAKQ YHGILRRRQS RAKAEVENKI SRSQRKPYLH ESRHLHAMRR ERGCGGRFLS 120 KNKKAEASSL LDDDDGEGSN ISLGSESMCN GSKCYQGSQL HLSAYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	61	124	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681880	1e-90	LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBank	LN713262	1e-90	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150466.1	1e-119	PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A0A0KWA0	1e-117	A0A0A0KWA0_CUCSA; Uncharacterized protein
STRING	XP_004154750.1	1e-119	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-36	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Cucsa.374630.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]