PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.377700.1

Common Name

Csa_7G000520, LOC101216907

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 457aa MW: 49942.8 Da PI: 6.1231

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.377700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.1e-10	259	306	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cucsa.377700.1 259 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 306 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-17	253	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.30E-10	253	310	No hit	No description
PROSITE profile	PS50888	15.58	255	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-17	255	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	259	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-9	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009911	Biological Process	positive regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MMNRALPEML HCLNSTGNCS DTLSVLERQR ARLKWQQDML FQQPLNQSCF SRADYGGGFP 60 PPVSVPADHL TGFPGYMSGG GGVGGGLSHV EMVMGAVKPD PGLEDGWSEM GKFDPSLLLN 120 PTACELNSSL SRTSSCLPVV APTVAEKMGS MAGRESFKKR KAEKAHNTTT TANTNNNKVT 180 VEEDENNNSK EKRIKTSSEG ELSKTTDQNG TKNNSTITTT TNNNRETSAD TSKENSKASE 240 VQKPDYIHVR ARRGQATDSH SLAERARREK ISERMKYLQD LVPGCNKITG KAGMLDEIIN 300 YVQSLQRQVE FLSMKLAAVN PRLDFNVDDL FNKEVFPPSC TAANFPSVGG MSSEMTDPSS 360 YLQFNPNNQQ MDSCCGLEMG INTSHVALRR TISAPVSFPE NFLDSSCLTQ FQPSSGWDVD 420 LQNMYNVGFD QGRSSNAFSS HPYTGSIEAG NIKMEM*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MMNRALPEML HCLNSTGNCS DTLSVLERQR ARLKWQQDML FQQPLNQSCF SRADYGGGFP  60
PPVSVPADHL TGFPGYMSGG GGVGGGLSHV EMVMGAVKPD PGLEDGWSEM GKFDPSLLLN  120
PTACELNSSL SRTSSCLPVV APTVAEKMGS MAGRESFKKR KAEKAHNTTT TANTNNNKVT  180
VEEDENNNSK EKRIKTSSEG ELSKTTDQNG TKNNSTITTT TNNNRETSAD TSKENSKASE  240
VQKPDYIHVR ARRGQATDSH SLAERARREK ISERMKYLQD LVPGCNKITG KAGMLDEIIN  300
YVQSLQRQVE FLSMKLAAVN PRLDFNVDDL FNKEVFPPSC TAANFPSVGG MSSEMTDPSS  360
YLQFNPNNQQ MDSCCGLEMG INTSHVALRR TISAPVSFPE NFLDSSCLTQ FQPSSGWDVD  420
LQNMYNVGFD QGRSSNAFSS HPYTGSIEAG NIKMEM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681798	0.0	LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658545.1	0.0	PREDICTED: transcription factor bHLH63-like
TrEMBL	A0A0A0K0C8	0.0	A0A0A0K0C8_CUCSA; Uncharacterized protein
STRING	XP_004173629.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3618	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-59	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Cucsa.377700.1
Entrez Gene	101216907

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]