PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378450.1
Common NameCBF3, Csa_3G751440
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 205aa    MW: 22620.8 Da    PI: 8.4827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-133685256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ykGVr++  +g+Wv+e+r p   +k+ +f++g+f +++ Aa a++  +++++ge
  Cucsa.378450.1 36 IYKGVRQR--NGKWVCELRRP---NKKSSFWVGTFCSPKRAAIAYDVVALAIKGE 85
                    69***975..6*********8...347**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-183593No hitNo description
PfamPF008478.6E-93585IPR001471AP2/ERF domain
PROSITE profilePS5103215.6993692IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-143692IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-213693IPR001471AP2/ERF domain
SMARTSM003806.3E-153698IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSSSSSSTN DHLPPPTTVA KRKAGRKKFQ ETRHPIYKGV RQRNGKWVCE LRRPNKKSSF  60
WVGTFCSPKR AAIAYDVVAL AIKGESVPLN FPNFAHSFPR VMSSSSSISD IRAMAIKTAE  120
TFTSGDILTP LSLSSPSSLS LCSLMSEEKV VGPNYFWDEE EVFNMPAIIA GMAEGLIITP  180
PGMKKEFDWE DSENTIELSL WSHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9007690.0JQ900769.1 Cucumis sativus CBF3 protein (CBF3) mRNA, complete cds.
GenBankKT7377430.0KT737743.1 Cucumis melo CRT/DRE-binding factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267604.11e-150uncharacterized protein LOC101209920
TrEMBLA0A140DCV71e-148A0A140DCV7_CUCME; CRT/DRE-binding factor 3
TrEMBLI3WEU31e-148I3WEU3_CUCSA; CBF3 protein
STRINGXP_004167927.11e-149(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-37C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]