PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378600.1
Common NameCsa_3G748810, LOC101207572
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 319aa    MW: 34605.5 Da    PI: 4.4348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05291314123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+++F +   L++H +  H
  Cucsa.378600.1 291 FSCKTCNRTFGSETALQSHTKAkH 314
                     89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0019291314IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-5291314IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.84291318IPR007087Zinc finger, C2H2
PROSITE patternPS000280293314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFWGAEVKV GEPLLVSPGE EKILHLSQAC LGESKSKGSE PVVLYVKVGN QKLVLGTLSS  60
EKFPQVSFDL VFDKEFELSH NWKNGSVHFT GYTSLLPEEE ESTYTDSEED FPLAVTDNGK  120
PEPEPEPKKD AKPDTSGTKK KVQIVEPSKV ASNSNIDSKK NKDSSDEDDD EDEESTDNEN  180
ENGGEEDDSD DDENESSGVD SEDSDEDSDD SLEEDEQTPK KAEASKKRPL DSANKTPAPD  240
KKAKLVTPQK TDGKKGVAHV ATPHPSKKAG KMAAANDKNK QQTPKSANAA FSCKTCNRTF  300
GSETALQSHT KAKHTADK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818416e-97LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132586e-97LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137868.10.0PREDICTED: histone deacetylase HDT1
TrEMBLA0A0A0LEE50.0A0A0A0LEE5_CUCSA; Uncharacterized protein
STRINGXP_004137868.10.0(Cucumis sativus)
STRINGXP_004161249.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-36histone deacetylase 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]