PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378700.2
Common NameCsa_3G748220, LOC101221983
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27205.6 Da    PI: 7.0603
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.3e-2066119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k
  Cucsa.378700.2  66 KKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 119
                     45679************************************************9 PP
2HD-ZIP_I/II119.71.6e-3865157193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e
  Cucsa.378700.2  65 EKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 157
                     69**************************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1955123IPR009057Homeodomain-like
PROSITE profilePS5007117.16761121IPR001356Homeobox domain
SMARTSM003891.6E-1763125IPR001356Homeobox domain
PfamPF000464.1E-1766119IPR001356Homeobox domain
CDDcd000867.93E-1766122No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2168128IPR009057Homeodomain-like
PRINTSPR000312.6E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000312.6E-5101117IPR000047Helix-turn-helix motif
PfamPF021831.7E-8121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEWATGSFRP FVSRAPESSF GFLYNYNLEQ FQGVDVKHSA MAGASETVLQ GLVPGMDMNS  60
YGNLEKKKRL SSEQLESLER SFQEEIKLDP DRKQKLSKEL GLQPRQIAVW FQNRRARWKA  120
KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQA ARNQVSTVYT DLSGEETVES  180
TSVGAGCSSK PRPVAAAAAV AAANHYTTPP EQCNYVFNTE EYNPMSPAFW GSLPSSYHPQ  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0956520.0KM095652.1 Cucumis sativus multicellular trichome development class I homeodomain-leucine zipper transcription factor (Gl) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138002.10.0PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
RefseqXP_008442781.10.0PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
SwissprotQ9LZR06e-52ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0A0LED81e-179A0A0A0LED8_CUCSA; Uncharacterized protein
TrEMBLA0A1S3B7771e-179A0A1S3B777_CUCME; homeobox-leucine zipper protein ATHB-22-like isoform X2
STRINGXP_004138002.11e-180(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-39homeobox 51
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  5. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]