PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.379880.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 235aa    MW: 26629.9 Da    PI: 8.9504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.379880.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l++ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
   Cucsa.379880.2  9 KGPWTEQEDIQLICFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding55.81.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt+E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
   Cucsa.379880.2  62 RGKMTTQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.755456IPR017930Myb domain
SuperFamilySSF466892.08E-296103IPR009057Homeodomain-like
SMARTSM007171.8E-15858IPR001005SANT/Myb domain
PfamPF002496.6E-16956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-191063IPR009057Homeodomain-like
CDDcd001671.54E-101156No hitNo description
PROSITE profilePS5129427.06657111IPR017930Myb domain
SMARTSM007171.2E-1661109IPR001005SANT/Myb domain
PfamPF002499.0E-1662106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2364110IPR009057Homeodomain-like
CDDcd001672.25E-1164107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVEGQEIRKG PWTEQEDIQL ICFVGLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTTQEE RLVLELHAKW GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKRRGLSA  120
SSSSSSSSSS SSISSSSSSF NNPAKEFPAD TGPVKFFDSG GSEISASSST KKKIEENKEV  180
GGDQNGYTMD DIWKDIEDYC CGDSLWKMEE EESKLIFSGW PCLGLAQPNQ NFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2961111105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8114400.0LN811440.1 Lilium hybrid division I mRNA for MYB48, cultivar Prato.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148216.11e-167PREDICTED: transcription factor MYB48 isoform X1
SwissprotQ9LX821e-79MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3BIY11e-147A0A1S3BIY1_CUCME; transcription factor MYB48-like isoform X1
STRINGXP_004148216.11e-167(Cucumis sativus)
STRINGXP_004166626.11e-167(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-72myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]