PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.379890.1
Common NameCsa_6G303740, LOC101217058
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 140aa    MW: 14978 Da    PI: 7.4745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.379890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000521436123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Cucsa.379890.1 14 FVCKTCNREFSSFQALGGHRASH 36
                    89**********99999998887 PP
2zf-C2H211.80.000755981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cg  F+    L  H+r+H
  Cucsa.379890.1 59 HECSICGVEFPVGQALGGHMRRH 81
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-81281No hitNo description
PfamPF139128.1E-131338IPR007087Zinc finger, C2H2
SMARTSM003550.241436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9721441IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
PfamPF139125.0E-115882IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6165986IPR007087Zinc finger, C2H2
SMARTSM003550.145981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADSSIFHHP PRVFVCKTCN REFSSFQALG GHRASHRKPK LSMSGDALCN SNQNKTKAHE  60
CSICGVEFPV GQALGGHMRR HRNSSPPSQA MIMTAQPVSD ESDSDCGVGG GVDLDLNLTP  120
LENDLVRLQL MAPPVGCFT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819181e-130LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132651e-130LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148235.11e-100PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD49e-30ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0A0KEU79e-99A0A0A0KEU7_CUCSA; Uncharacterized protein
STRINGXP_004148235.12e-99(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-32C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]