PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.381330.1
Common NameCsa_2G315390, LOC101216118
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 551aa    MW: 60285.4 Da    PI: 6.6758
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.381330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22107208199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvlt+sd+++ g +++p+ +a+++         + +  +tl ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   ++s
  Cucsa.381330.1 107 FAKVLTSSDANNGGGFSVPRFCADSIfpplnyqV-E-PPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDAVIFA--RDS 197
                     89*********************999****9743.3.33359************************************************..557 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++  +v+++r+
  Cucsa.381330.1 198 SRDIFVGIRRS 208
                     88889***997 PP
2Auxin_resp881.8e-29261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++ ++FevvY+Pr +tseFv+++ekv+++l+ ++ +G R+km +eteds ++++ +Gtv++ s   +  W++S+Wr+L+
  Cucsa.381330.1 261 AAELAAEFKPFEVVYYPRIGTSEFVIPAEKVNNSLNYQWYPGIRVKMPVETEDSLKTQWyQGTVTSASVPIQGPWKGSPWRMLE 344
                     67889999***************************************************9*********999**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-29102216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-33104218IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-20107208IPR003340B3 DNA binding domain
CDDcd100174.51E-19107207No hitNo description
SMARTSM010194.3E-20107209IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689107209IPR003340B3 DNA binding domain
PfamPF065074.8E-26261343IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MMDPNLWRAF SGNSAHIHTV GSEVYYFVQG HLEQATYVPT LSRSVLSNPI TKCIVSAADY  60
TADPLSDEVC LKLNLNPIPP GQSVSQVVHP FSSCDDGNGQ RNRIEKFAKV LTSSDANNGG  120
GFSVPRFCAD SIFPPLNYQV EPPVQTLAIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV  180
NNKKLIAGDA VIFARDSSRD IFVGIRRSSK SSGGGDCSKW NSQVGGGGRC NVEEKRSGDR  240
STDVFTRTNI GKVPAETVAT AAELAAEFKP FEVVYYPRIG TSEFVIPAEK VNNSLNYQWY  300
PGIRVKMPVE TEDSLKTQWY QGTVTSASVP IQGPWKGSPW RMLEVTWEET DALQSAKFVS  360
PWEVELASPS PPIPPPLHSA KKYRIPQKSG MVNAEADLFS PMMRFGDSTM GQFNRSLMNF  420
NSFPAGMQGA RQIFFRESGS SNPHNEISPP TSDENSMLKL NTAPNTQTVS TDLHIGSVQS  480
DTLSPDSQAS VLSFATGTAE NQSCNSTKAG VNSFQLFGQI IYTSPPAENE LDNGADSDDG  540
DKKRKRSIDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-61136550388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1541546KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150940.10.0PREDICTED: auxin response factor 17
TrEMBLA0A0A0LJV30.0A0A0A0LJV3_CUCSA; Auxin response factor
STRINGXP_004169060.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-129auxin response factor 17
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]