PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.382180.2

Common Name

Csa_7G007890, LOC101216189

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 567aa MW: 62083.4 Da PI: 6.6235

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.382180.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.7e-10	423	480	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Cucsa.382180.2 423 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 480 9********************************************9998877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-18	419	483	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	421	484	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.16E-11	423	474	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-9	423	479	No hit	No description
Pfam	PF00170	6.7E-9	423	477	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.95E-24	424	473	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGDTEDVNTE NMRNHLQCSY GVSSSSAGNL PFSMDQLKIS QMNSSQIRPQ HFHSNFLGDN 60 SRRIGIPPSP NSQQIPPISP YSQIPISRPM NQQNYNPVPT HSRSLSQPSF FSLDSLPPLS 120 PSPFRESPTT SNSDQVSADT SMEDRDNSSH SLLPPSPYMR VNSSKMGDSL PPRKAHRRSN 180 SDIPFGLSSM IQPSPLLPFN SSGGLERSTS SKENAGLLKP SSQFVKREPS LEKSVDNNLE 240 GMGERKSDGD SVDDLFSAYM NLDHIDLFNS SGTNDKNGHE NREDLDSRGS GTKTNGGESS 300 DNEAESSVNE SGDSAQMPGL NSSAEKREGI KRTAGGDIAP TTRHYRSVSM DSFMGKLQFG 360 DESPKMPPTP PGVRPGQLSS NNLVDGNSAP FSLEFGNGEF SGAELKKIMA NDKLAEIALT 420 DPKRAKRILA NRQSAARSKE RKMRYISELE HKVQTLQTEA TTLSAQLTLL QRDSVGLTNQ 480 NNELKFRLQA MEQQAQLRDA LNEALTAEVQ RLKLATTELN AQSHQNGVMS QAAINHHSLQ 540 LQLQHHQQQQ HMQQNGSATT KPESNQ*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGDTEDVNTE NMRNHLQCSY GVSSSSAGNL PFSMDQLKIS QMNSSQIRPQ HFHSNFLGDN  60
SRRIGIPPSP NSQQIPPISP YSQIPISRPM NQQNYNPVPT HSRSLSQPSF FSLDSLPPLS  120
PSPFRESPTT SNSDQVSADT SMEDRDNSSH SLLPPSPYMR VNSSKMGDSL PPRKAHRRSN  180
SDIPFGLSSM IQPSPLLPFN SSGGLERSTS SKENAGLLKP SSQFVKREPS LEKSVDNNLE  240
GMGERKSDGD SVDDLFSAYM NLDHIDLFNS SGTNDKNGHE NREDLDSRGS GTKTNGGESS  300
DNEAESSVNE SGDSAQMPGL NSSAEKREGI KRTAGGDIAP TTRHYRSVSM DSFMGKLQFG  360
DESPKMPPTP PGVRPGQLSS NNLVDGNSAP FSLEFGNGEF SGAELKKIMA NDKLAEIALT  420
DPKRAKRILA NRQSAARSKE RKMRYISELE HKVQTLQTEA TTLSAQLTLL QRDSVGLTNQ  480
NNELKFRLQA MEQQAQLRDA LNEALTAEVQ RLKLATTELN AQSHQNGVMS QAAINHHSLQ  540
LQLQHHQQQQ HMQQNGSATT KPESNQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681798	0.0	LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658569.1	0.0	PREDICTED: uncharacterized protein LOC101216189
TrEMBL	A0A0A0K5S3	0.0	A0A0A0K5S3_CUCSA; Uncharacterized protein
STRING	XP_004170187.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.382180.2
Entrez Gene	101216189

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]