PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.382200.1

Common Name

Csa_7G007860, LOC101215473

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BBR-BPC

Protein Properties

Length: 325aa MW: 36391.3 Da PI: 10.2023

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.382200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	359.2	8.4e-110	12	324	1	301
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 mdd ++e r+k y++ ++ ++l +++++ms+iaerda+irernlalsekk+a+a+rd+a+ qrd+al +r+ al+er Cucsa.382200.1 12 MDDGRQHEngRHKLdYFRgssspwnmvppnhvKEpNALV--MNKKIMSIIAERDAAIRERNLALSEKKEALAARDEALRQRDEALVQRDSALMER 104 666655555788877888999999999876663335666..99************************************************** PP GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk.kkks 171 dn+l+al+ ++n+ s+ p g +v ++tk +++l + + p+++++++++++ ++++a+pi+ a+ea ++++ k+ + +k +k+++ + kk + Cucsa.382200.1 105 DNALAALEIRDNA--SNFPLGGGVQRKTKRLHHLSN-HMPNISETSYGTKDVHITDAFPITVIASEAVKSQQGKRAKDNKLVSSKTSRPPrKKVG 196 *****9998..77899999*****9998.78*********************9999999999877777776666664414445 PP GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266 e+ +++ ++++ ++ +++++ +d++ln vs+D+s++P+P+CsCtG rqCYkWGnGGWqS+CCtt +S+yPLP ++r+aR++grKmS+++f+ Cucsa.382200.1 197 EDLNRHAATDG--TKYRTDWDGQDVGLNLVSFDDSSMPAPICSCTGFARQCYKWGNGGWQSSCCTTHMSMYPLPHLENKRHARMGGRKMSGSVFT 289 56666666666..68**************************************************************************** PP GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 klL++Laa G+dls pvDLkdhWA+HGtn+++tir Cucsa.382200.1 290 KLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 324 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.7E-141	12	324	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.3E-97	12	324	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MIMSWKLFFG TMDDGRQHEN GRHKLDYFRG SSSPWNMVPP NHVKEPNALV MNKKIMSIIA 60 ERDAAIRERN LALSEKKEAL AARDEALRQR DEALVQRDSA LMERDNALAA LEIRDNASNF 120 PLGGGVQRKT KRLHHLSNHM PNISETSYGT KDVHITDAFP ITVIASEAVK SQQGKRAKDN 180 KLVSSKTSRP PRKKVGEDLN RHAATDGTKY RTDWDGQDVG LNLVSFDDSS MPAPICSCTG 240 FARQCYKWGN GGWQSSCCTT HMSMYPLPHL ENKRHARMGG RKMSGSVFTK LLSRLAAAGH 300 DLSVPVDLKD HWARHGTNRY ITIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681798	0.0	LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148546.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658563.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658564.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658565.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658566.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658567.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_011658568.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-131	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A0A0K147	0.0	A0A0A0K147_CUCSA; Uncharacterized protein
STRING	XP_004172323.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-127	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Cucsa.382200.1
Entrez Gene	101215473

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]