PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.384890.1

Common Name

Csa_6G156050

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 258aa MW: 28131.3 Da PI: 9.671

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.384890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.5	2.4e-34	44	116	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec 73 +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l + + +c Cucsa.384890.1 44 TARKDRHSKVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADlppcntN-----AC 116 789**********************************************************9995553220.....23 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	44	114	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.118	46	104	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDSNKPFLNS TLEQHSTPTT TMGINTIPGQ NIHIPGGGLV VRSTARKDRH SKVYTSRGLR 60 DRRVRLSAHT AIQFYDVQDR LGFDRPSKAV DWLIKKAKSA IDKLSADLPP CNTNACFSVP 120 VETQTNGIDV VTVFYTASSG NSGPGFDDGF EKIVAWNTNV FGSIPILNQS STAFPQRGPL 180 QSRLESTVPH YTWNDLSVVA AGKRHPNPIQ ENSSPSIPRF ISNELPHLDV HGQFQNDGDG 240 KDNGGKSSSH SSSYSRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-22	51	104	1	54	Putative transcription factor PCF6
5zkt_B	3e-22	51	104	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	1e-177	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	1e-177	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149285.1	1e-122	PREDICTED: uncharacterized protein LOC101204399
TrEMBL	A0A0A0KF06	1e-161	A0A0A0KF06_CUCSA; Uncharacterized protein
STRING	XP_008456416.1	1e-140	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	1e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.384890.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]