PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.385090.1

Common Name

Csa_6G152920, LOC101203423

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 335aa MW: 38198.3 Da PI: 7.9707

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.385090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.1	2.2e-14	257	300	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe + +L++eN +Lk+ Cucsa.385090.1 257 RRQRRMIKNRESAARSRARKQAYTVELEVELNQLKEENIKLKEI 300 79***************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-9	253	315	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	255	299	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-13	256	299	No hit	No description
SuperFamily	SSF57959	1.06E-10	257	300	No hit	No description
CDD	cd14707	3.36E-21	257	298	No hit	No description
Pfam	PF00170	3.3E-12	257	301	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	260	275	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0033613	Molecular Function	activating transcription factor binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MENSQLEEMI SEVAARQTNK HDSILSLTLD EIQCKSGKNF GGMSMDEFLA NIWNVEDIQT 60 QFHSQSQESE PQNHHPFMVT NNSRSNLCNQ GSFSIPIPLC GKTVDEIWSE IHKDQQHPHH 120 HKFINVQQNP CQSQQALGEM TLEDFLVKAG VVQEASSASC SMKQQLCSVN NRSMVDLGFG 180 IGEKLGLSLS YQQNNDAARI RNMSGNCFSN YQMLTQSVGE PSDNSSIQKC QGLMTDWVEP 240 SNKKRIIDGP TEVVVQRRQR RMIKNRESAA RSRARKQAYT VELEVELNQL KEENIKLKEI 300 VVKFFSIMQR KQCEKRQKPT EKLRTMRRIA SMAW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	0.0	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149281.2	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBL	A0A0A0KEY1	0.0	A0A0A0KEY1_CUCSA; Uncharacterized protein
STRING	XP_004149281.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2092	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44460.1	7e-66	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.385090.1
Entrez Gene	101203423

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]