PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.385400.1

Common Name

Csa_6G150550, LOC101204380

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 297aa MW: 31714.5 Da PI: 4.4355

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.385400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	270	293	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H Cucsa.385400.1 270 FSCTSCDRSFGSDGALQSHSKAkH 293 89*****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.928	270	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	272	293	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEFWGVEVKP GQPLSVQPGD MNYVHLSQAT LGDLKKDKAN EPVTIFLKID DQKLVLGVLS 60 ADKFPQISFD LVFEKEFELS HNGKGGSIYC LGYRAPMEDQ GQEEFSDSDF GSEDEELGML 120 SAENGKASEK EKSIGGKIFG LKPESSKKAD AKSIAPSKEE DDDSEDDDSS DEGSDSDDVS 180 DEEMLGGDSD SDDEDDGTDS EEETPKKVNE SSKKRSNESA SKTPVSKKTK LASAEKTDSK 240 KGGHTATPHP AKKPAKSPGK AETPKSGGQF SCTSCDRSFG SDGALQSHSK AKHGAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	1e-116	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	1e-116	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145781.1	0.0	PREDICTED: histone deacetylase HDT1
TrEMBL	A0A0A0KGM8	0.0	A0A0A0KGM8_CUCSA; Histone deacetylase 2a
STRING	XP_004160080.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	7e-30	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Cucsa.385400.1
Entrez Gene	101204380

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]