PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.385410.1
Common NameCsa_6G150540
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 295aa    MW: 31680.7 Da    PI: 4.6259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.385410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022268291123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C++sF +   L++H +  H
  Cucsa.385410.1 268 FSCKSCDRSFGSDVALQSHSKAkH 291
                     89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.489268294IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEFWGVEVKA GQSLIVKPGN EKLIHLSQAT LGEIKKEKAN ENVTIFLKIG DQKLVLGILS  60
GEKFPQLSFD LVFEKEFELS HNGKSGSVYC AGYQAYGDDH EHTDGYLDSD SASEDEELPL  120
VSAPNGKPSP KGVKPGLVES NDAKKASLKK PLKPSKDDDE DSEDDESDGD EDSDDESDEE  180
MLDGDNSDEE DDDSESDEET PKKVESAKKR LNESATKTTP VPAKKAKLAT PEKTDSKKGG  240
HTATPHPAKK TGKTPAAKLE TPKSGGQFSC KSCDRSFGSD VALQSHSKAK HGGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819242e-93LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132652e-93LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657054.10.0PREDICTED: histone deacetylase HDT1 isoform X1
SwissprotQ8LJS25e-70HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0A0KB051e-163A0A0A0KB05_CUCSA; Histone deacetylase 2a
STRINGXP_004160079.11e-177(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-29histone deacetylase 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]