PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.385410.3
Common NameCsa_6G150540
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 294aa    MW: 31570.6 Da    PI: 4.5834
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.385410.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022267290123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C++sF +   L++H +  H
  Cucsa.385410.3 267 FSCKSCDRSFGSDVALQSHSKAkH 290
                     89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.489267293IPR007087Zinc finger, C2H2
PROSITE patternPS000280269290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEFWGVEVKA GQSLIVKPGN EKLIHLSQAT LGEIKKEKAN ENVTIFLKIG DQKLVLGILS  60
GEKFPQLSFD LVFEKEFELS HNGKSGSVYC AGYQAYGDDH EQDGYLDSDS ASEDEELPLV  120
SAPNGKPSPK GVKPGLVESN DAKKASLKKP LKPSKDDDED SEDDESDGDE DSDDESDEEM  180
LDGDNSDEED DDSESDEETP KKVESAKKRL NESATKTTPV PAKKAKLATP EKTDSKKGGH  240
TATPHPAKKT GKTPAAKLET PKSGGQFSCK SCDRSFGSDV ALQSHSKAKH GGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819242e-93LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132652e-93LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145780.10.0PREDICTED: histone deacetylase HDT1 isoform X2
SwissprotQ8LJS27e-71HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0A0KB051e-162A0A0A0KB05_CUCSA; Histone deacetylase 2a
STRINGXP_004160079.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-29histone deacetylase 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]