PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.385930.1

Common Name

Csa_6G147520, LOC101212002

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 135aa MW: 14744.8 Da PI: 10.4767

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.385930.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.5	3.5e-32	33	114	8	81
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........seceaesssss 81 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa + c+++ss+ + Cucsa.385930.1 33 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlpgcsKPCDPSSSNTN 114 59********************************************************666665555444333322222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-27	33	113	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.43	33	87	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MRVKRPTSNS PRNAPKPNSP IASESKLIPS KAPKDRHAKV HGRDRRIRLP PLCAARVFQL 60 TRELGNKTDG QTVEWLLKKA EPSIIALTGK NIASATLDLP GCSKPCDPSS SNTNSTTTSY 120 FEEETLGGNN YAFPM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681935	0.0	LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145813.1	7e-96	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-27	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A0KDC7	1e-94	A0A0A0KDC7_CUCSA; Uncharacterized protein
STRING	XP_004165860.1	3e-95	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.385930.1
Entrez Gene	101212002

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]