PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.387940.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 134aa    MW: 15908.5 Da    PI: 10.7046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.387940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.93.7e-3158054128
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ v++  ++e vg++ktLvfyk+rap+g kt W+mhe+r+
  Cucsa.387940.1   5 NGNEWYFFSFRDRKYSTGFRTNRATTAGYWKATGKDRLVMDPtRKEIVGMRKTLVFYKNRAPNGIKTGWIMHEFRI 80 
                     568**************************************978888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.271103IPR003441NAC domain
SuperFamilySSF1019411.02E-33386IPR003441NAC domain
PfamPF023652.5E-15980IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
VAKLNGNEWY FFSFRDRKYS TGFRTNRATT AGYWKATGKD RLVMDPTRKE IVGMRKTLVF  60
YKNRAPNGIK TGWIMHEFRI ETPHMPPKLS ISIQNILIDF YFKGNLENLW KKEYYSIFKQ  120
MEKCRGRLSH NIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-2488372145NO APICAL MERISTEM PROTEIN
1ut4_B7e-2488372145NO APICAL MERISTEM PROTEIN
1ut7_A7e-2488372145NO APICAL MERISTEM PROTEIN
1ut7_B7e-2488372145NO APICAL MERISTEM PROTEIN
4dul_A7e-2488372145NAC domain-containing protein 19
4dul_B7e-2488372145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818021e-117LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132551e-117LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149326.13e-59PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-34NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3C7P39e-57A0A1S3C7P3_CUCME; NAC domain-containing protein 21/22-like
STRINGXP_004149326.11e-58(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-50NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]