PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388100.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 238aa MW: 27077.8 Da PI: 8.8345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.5	1.3e-29	68	154	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+++GF +r+++ ++s r+g +++r++vC+keg+r+ + k+ +++r++ra+tr gCka+++vkkek+gkw+vtk++++HnH+l Cucsa.388100.1 68 FYDAYASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKR-SENRKPRAVTREGCKAMVVVKKEKTGKWVVTKFVKDHNHPL 154 9****************************************999.9************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-28	68	155	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MNSEQFGFFF SLSLLVDGIP SVLNVVEDPS GKDFARAVTE AEAITSNNSD TEPFVGMEFE 60 SEESVKVFYD AYASRLGFIM RVDAFRRSMR DGAVVWRRLV CNKEGFRKFK PKRSENRKPR 120 AVTREGCKAM VVVKKEKTGK WVVTKFVKDH NHPLIVTPAS ARRNVLLSHT RDEKDAKIRE 180 LTAELQQERK RCAAYQEQLA MILGDMEEHS NHLARNIDNI IQSVRDIESE NNAFSNS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	0.0	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150340.1	1e-164	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0A0KA59	1e-163	A0A0A0KA59_CUCSA; Uncharacterized protein
STRING	XP_004150340.1	1e-164	(Cucumis sativus)
STRING	XP_004163163.1	1e-164	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-90	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.388100.1