PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.392170.1

Common Name

Csa_1G051590, LOC101221267

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SBP

Protein Properties

Length: 315aa MW: 34844.1 Da PI: 8.6086

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.392170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.2e-42	25	101	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Cucsa.392170.1 25 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQT 101 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	18	86	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	22	99	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.28E-39	23	104	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-31	25	98	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MASSTSGSSK RARGTHNGNT QPVSCLVDGC NSDLSNCRDY HRRHKVCELH SKTPQVTIAG 60 LKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ TDLLPRSAAG PFSYHQGPQL 120 LPFTSSQVFP STTVSSHGWS SGGSDNATDS GVHHNRNPQL NFVEKQQSLF VETSDQTNSI 180 NNYKASPPLG LMHGGGGSER NKMIYDRFRI GINESDCALS LLSSPQTQIQ SDHQPQQQRN 240 ASISLLHPLT HQNAFDNSSD TSSSSVQISN DTHHHHHHHP HPHPHGVLNF SGIFGISSDN 300 PGNQSPSTLP FHWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	25	98	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652208.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBL	A0A0A0LWQ4	0.0	A0A0A0LWQ4_CUCSA; Uncharacterized protein
STRING	XP_004154127.1	0.0	(Cucumis sativus)
STRING	XP_004170928.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24463	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-52	SBP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.392170.1
Entrez Gene	101221267

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]