PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.394330.1

Common Name

Csa_2G348870, LOC101211011

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 195aa MW: 21595.8 Da PI: 7.5383

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.394330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	184.6	5.2e-57	9	178	4	166
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 +sseq+ yvqC+ C+til+v+vP++ l++vv vrCG C+ llsvn+ak s ll++ sh + ke +e +v+++ + ++++s+s Cucsa.394330.1 9 ADSSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCAGLLSVNMAKPSfipfDLLTSLSH--NLPKEGFGQEFNVQKHYCLDSLSNSSSSSD 101 679*******************************************998666667777776..445566778888877776666666665555 PP YABBY 95 svssekl..senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +s++ +++ed++v +pp v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++ Cucsa.394330.1 102 LLTSYHNiiQNHEDDDVIIIPPtpvVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPAMAHKEAFKTAAKNWAHLPPV 178 54444322455556665444433459***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-54	11	179	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-9	125	177	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-6	129	177	IPR009071	High mobility group box domain
CDD	cd01390	1.40E-5	136	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSTVEQLLAD SSEQIRYVQC GLCSTILLVN VPYSNLSMVV SVRCGNCAGL LSVNMAKPSF 60 IPFDLLTSLS HNLPKEGFGQ EFNVQKHYCL DSLSNSSSSS DLLTSYHNII QNHEDDDVII 120 IPPTPVVNKP PEKKQRAPSA YNQFIKEEIR RLKAENPAMA HKEAFKTAAK NWAHLPPVNA 180 EGADHMMLRK KNVM*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143066.2	1e-144	PREDICTED: axial regulator YABBY 4-like
Swissprot	Q9LDT3	1e-51	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0A0LK60	1e-143	A0A0A0LK60_CUCSA; Uncharacterized protein
STRING	XP_004143066.1	7e-90	(Cucumis sativus)
STRING	XP_004172999.1	7e-90	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.394330.1
Entrez Gene	101211011

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]