PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.394520.1
Common NameCsa_2G349090, LOC101209535
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 189aa    MW: 21516.9 Da    PI: 9.945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.394520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19251255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa+a++ a+++++g
  Cucsa.394520.1  2 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAARAYDCAARSMRG 51
                    59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-30258IPR001471AP2/ERF domain
PfamPF008474.4E-13251IPR001471AP2/ERF domain
SMARTSM003801.0E-33265IPR001471AP2/ERF domain
CDDcd000183.67E-30258No hitNo description
SuperFamilySSF541715.69E-22259IPR016177DNA-binding domain
PROSITE profilePS5103222.84259IPR001471AP2/ERF domain
PRINTSPR003671.5E-10314IPR001471AP2/ERF domain
PRINTSPR003671.5E-102541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRYRGVRRRP WGRYAAEIRD PQSKERRWLG TFDTAEEAAR AYDCAARSMR GLKARTNFVY  60
PSSPPAPHSL SSDDYLIPRF NFPPKHSLPR LNSSNWPLFS TPNRGPDFLW SGHAQRINTA  120
SPTLDMLLLR DFLNFPSSNY NHSSKPSYSI NTTTNNNSTT KITPPPPPPE NYSSEFLPKD  180
SPDSGLLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-212581471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143060.11e-135PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A0A0LMT01e-134A0A0A0LMT0_CUCSA; AP2/ERF domain-containing transcription factor
STRINGXP_004143060.11e-134(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.15e-15ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]