PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.394820.1

Common Name

Csa_2G350410, LOC101222888

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 398aa MW: 45451.8 Da PI: 6.5192

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.394820.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.6	1.2e-26	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s kmrergf rsp++C++kw+nl k++kk k+++++ s +++ ++++e Cucsa.394820.1 73 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISTKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSCYKEIE 154 *******************************************************************984...445778888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-4	63	134	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.56	65	129	IPR017877	Myb-like domain
SMART	SM00717	9.2E-5	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	8.74E-29	71	136	No hit	No description
Pfam	PF13837	1.1E-20	72	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MYLSDKPRPI DIYKEEGSRD MLIEVASNGD HHIQPHQPQP QPQQTHQQHQ MMLGDSSGED 60 HEVKAPKKRA ETWVQDETRS LIALRREMDG LFNTSKSNKH LWEQISTKMR ERGFDRSPTM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSCY KEIEEILKER SKSTQYKSPT PPKIDSYMQF 180 SDKGIEDNGL SFGPVEGGRP SLNLERQLDH DGHPLAITAA DAVAATGIPP WNWREAPGNG 240 GESQAFGGRV ISVKWGDYTR RIGVDGTAEA IKEAIKSAFG LRTKRAFWLE DEDQVVRSLD 300 RDMPLGNYTL HLDEGVAVKI CLYDESNHLP VHSEDKVFYI EEDYRDFLAR RGWTSLREFD 360 GYRNIDNMDD LRSGALYRRN IDNMDDLRPG AIYRGVS*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MYLSDKPRPI DIYKEEGSRD MLIEVASNGD HHIQPHQPQP QPQQTHQQHQ MMLGDSSGED  60
HEVKAPKKRA ETWVQDETRS LIALRREMDG LFNTSKSNKH LWEQISTKMR ERGFDRSPTM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSCY KEIEEILKER SKSTQYKSPT PPKIDSYMQF  180
SDKGIEDNGL SFGPVEGGRP SLNLERQLDH DGHPLAITAA DAVAATGIPP WNWREAPGNG  240
GESQAFGGRV ISVKWGDYTR RIGVDGTAEA IKEAIKSAFG LRTKRAFWLE DEDQVVRSLD  300
RDMPLGNYTL HLDEGVAVKI CLYDESNHLP VHSEDKVFYI EEDYRDFLAR RGWTSLREFD  360
GYRNIDNMDD LRSGALYRRN IDNMDDLRPG AIYRGVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-50	67	152	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649512.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0A0LKN9	0.0	A0A0A0LKN9_CUCSA; Uncharacterized protein
STRING	XP_008444419.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.394820.1
Entrez Gene	101222888

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]