PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.395100.1
Common NameCsa_2G351680, LOC105434748
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 137aa    MW: 15316.5 Da    PI: 8.2131
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.395100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.91.1e-3013108196
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC+ +C+lapyfpa++ ++f+nv+klFG++nvlk+l+ l+  +r +a++++++eA++ra d v G++++i +lq++++ l+a+  
  Cucsa.395100.1  13 ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHR 107
                     7***************************************************************************************9999876 PP

          DUF260  96 l 96 
                     +
  Cucsa.395100.1 108 H 108
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.4312113IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3013107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDINFPTTTQ APACAACKFH RRKCSVECPL APYFPANRLQ DFENVRKLFG VKNVLKTLAG  60
LDSYNRFKAA ECMIFEANCR ALDLVGGCCQ IIPRLQNEIA LLEAQHRHIL RQLQISRQTA  120
AAISQLGAIP SEFDSDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2161313124LOB family transfactor Ramosa2.1
5ly0_B3e-2161313124LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-157LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-157LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650178.16e-97PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A0A0LNK61e-95A0A0A0LNK6_CUCSA; Uncharacterized protein
STRINGXP_008444461.11e-69(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-21LOB domain-containing protein 27
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]