PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.395170.3
Common NameCsa_2G351760, LOC101204223
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 408aa    MW: 46299 Da    PI: 6.506
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.395170.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083373751854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Cucsa.395170.3 337 MFQNflHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVR 375
                     6887779******************************88 PP
2BELL643.2e-21212276570
            BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                     + +kk++Ll+ll+ +d+rY q+ ++++tv s+F+a+++l++ +++t+  l++i+  +++L+++i++
  Cucsa.395170.3 212 VDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDP-RLHTRYTLQTITSVYKNLREKITS 276
                     679**************************************.**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-14133276IPR006563POX domain
PfamPF075265.8E-22139275IPR006563POX domain
PROSITE profilePS5007111.175316379IPR001356Homeobox domain
SMARTSM003898.7E-5319383IPR001356Homeobox domain
CDDcd000861.26E-9319380No hitNo description
SuperFamilySSF466891.92E-15320388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-26322385IPR009057Homeodomain-like
PfamPF059201.6E-14336375IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLWWICSLIC EGDESLCNAN NKWESDRFHC IQQLSGENPE TSDSQTVLSM EHLHQNGWMS  60
SNTMNSKLWN ELSLSLATTE PVLSGGTDFL DQYSQLTFSG ATQPCLNSTE LASNLNSGSS  120
RDLSLSYGCG NSVRLSRAIA GSRYLSVIQD VLSQIASYPL ENSDQVDHST TATGFVPLSS  180
SSSLDDATIE YGSDVTGRYS SQMEPEWQNL SVDAKKSHLL TLLQLIDERY TQCLDEIHTV  240
TSAFHAATDL DPRLHTRYTL QTITSVYKNL REKITSCIFA IGKHSNATCT KEKEKFFEAT  300
FLQKQWALQQ LKRKDNQLWR PQRGLPEKSV SVLRAWMFQN FLHPYPKDTE KHLLAVKSGL  360
TRNQVSNWFI NARVRLWKPM IEEMYAEMSR RKSNQNEEGI ERIHCPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14325383563Homeobox protein Meis2
3k2a_B2e-14325383563Homeobox protein Meis2
4xrm_A2e-14325383563Homeobox protein Meis2
4xrm_B2e-14325383563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143038.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649535.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649536.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649537.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649538.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649539.10.0PREDICTED: homeobox protein ATH1
RefseqXP_011649540.10.0PREDICTED: homeobox protein ATH1
SwissprotP487313e-99ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0A0LKF30.0A0A0A0LKF3_CUCSA; Uncharacterized protein
STRINGXP_004143038.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-101homeobox gene 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]