PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.395430.1

Common Name

Csa_2G354030, LOC101202772

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 673aa MW: 71209.2 Da PI: 7.5003

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.395430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2e-24	265	309	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cucsa.395430.1 265 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 309 79****************************************985 PP
2	QLQ	59.5	9.4e-21	196	231	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Cucsa.395430.1 196 PFTPSQWMELEQQALIYKYITANVPVPSYLLIPIRK 231 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.3E-12	195	231	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	196	230	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.702	196	231	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	265	309	IPR014977	WRC domain
Pfam	PF08879	8.2E-21	266	308	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MDFGVVGLDG GVVVVGSSDT SGFSSLAAAA ASSDAETTKQ KWYESVSGFI HKQERSASVA 60 APQEQDDDDG VGGGGGGGGD EDLRTSKLLK TSDHLSSSTS SSTKGFLFPH RHSASLLRST 120 NSSPFFLSDS NQNHHHQMLC FSSPKTESFP LDKTSSLSAV SPNLYHSSAP RNAGCNYGGL 180 NGGSMHGSSF IGVRAPFTPS QWMELEQQAL IYKYITANVP VPSYLLIPIR KAFESAGFSA 240 FSGGFLRPGT VGWGSFNMGF SNSSDPEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR 300 HRSRKPVEGQ AGHSHSVAGA SNITTATAAT KLISSSASTA AVPCNGSPNS LSFANQHFKN 360 LQRPGSHPPP SSAAAQINRM LITNKENGGI GLLDSTTTSG LSVLSPSIDI KHSKQLPFAI 420 QKQQNPFEES PRGTEFGLVP SDFLLGSSQK SSSLMNYRGF NPSEGIASTQ ESAESHHSLR 480 QFFNNWPKNQ PDSSSVSWSN SNLDPQSDRT QLSISIPMAT SDFRSSTSSP ANDKLTLSPL 540 KSAQELDPIQ MGLGVGNVMD EPNNRQANWI PISWESSMGG PLGEVLNSTN NNGGESKSSS 600 MLNLMTEGWD NSPSLGSSPT GVLQKTAFGS FSNSSTGSSP RTENHKTNEG GGGGSSQCSD 660 RFVNSSSSLP SV*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MDFGVVGLDG GVVVVGSSDT SGFSSLAAAA ASSDAETTKQ KWYESVSGFI HKQERSASVA  60
APQEQDDDDG VGGGGGGGGD EDLRTSKLLK TSDHLSSSTS SSTKGFLFPH RHSASLLRST  120
NSSPFFLSDS NQNHHHQMLC FSSPKTESFP LDKTSSLSAV SPNLYHSSAP RNAGCNYGGL  180
NGGSMHGSSF IGVRAPFTPS QWMELEQQAL IYKYITANVP VPSYLLIPIR KAFESAGFSA  240
FSGGFLRPGT VGWGSFNMGF SNSSDPEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR  300
HRSRKPVEGQ AGHSHSVAGA SNITTATAAT KLISSSASTA AVPCNGSPNS LSFANQHFKN  360
LQRPGSHPPP SSAAAQINRM LITNKENGGI GLLDSTTTSG LSVLSPSIDI KHSKQLPFAI  420
QKQQNPFEES PRGTEFGLVP SDFLLGSSQK SSSLMNYRGF NPSEGIASTQ ESAESHHSLR  480
QFFNNWPKNQ PDSSSVSWSN SNLDPQSDRT QLSISIPMAT SDFRSSTSSP ANDKLTLSPL  540
KSAQELDPIQ MGLGVGNVMD EPNNRQANWI PISWESSMGG PLGEVLNSTN NNGGESKSSS  600
MLNLMTEGWD NSPSLGSSPT GVLQKTAFGS FSNSSTGSSP RTENHKTNEG GGGGSSQCSD  660
RFVNSSSSLP SV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143032.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBL	A0A0A0LR18	0.0	A0A0A0LR18_CUCSA; Uncharacterized protein
STRING	XP_004143032.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	6e-95	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.395430.1
Entrez Gene	101202772

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]