PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.395430.2

Common Name

Csa_2G354030, LOC101202772

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 671aa MW: 71051 Da PI: 7.5003

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.395430.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2e-24	263	307	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cucsa.395430.2 263 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 307 79****************************************985 PP
2	QLQ	59.5	9.4e-21	196	231	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Cucsa.395430.2 196 PFTPSQWMELEQQALIYKYITANVPVPSYLLIPIRK 231 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.3E-12	195	231	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	196	230	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.702	196	231	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	263	307	IPR014977	WRC domain
Pfam	PF08879	8.2E-21	264	306	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDFGVVGLDG GVVVVGSSDT SGFSSLAAAA ASSDAETTKQ KWYESVSGFI HKQERSASVA 60 APQEQDDDDG VGGGGGGGGD EDLRTSKLLK TSDHLSSSTS SSTKGFLFPH RHSASLLRST 120 NSSPFFLSDS NQNHHHQMLC FSSPKTESFP LDKTSSLSAV SPNLYHSSAP RNAGCNYGGL 180 NGGSMHGSSF IGVRAPFTPS QWMELEQQAL IYKYITANVP VPSYLLIPIR KAFESAGFSA 240 FSGGFLRPVG WGSFNMGFSN SSDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR 300 SRKPVEGQAG HSHSVAGASN ITTATAATKL ISSSASTAAV PCNGSPNSLS FANQHFKNLQ 360 RPGSHPPPSS AAAQINRMLI TNKENGGIGL LDSTTTSGLS VLSPSIDIKH SKQLPFAIQK 420 QQNPFEESPR GTEFGLVPSD FLLGSSQKSS SLMNYRGFNP SEGIASTQES AESHHSLRQF 480 FNNWPKNQPD SSSVSWSNSN LDPQSDRTQL SISIPMATSD FRSSTSSPAN DKLTLSPLKS 540 AQELDPIQMG LGVGNVMDEP NNRQANWIPI SWESSMGGPL GEVLNSTNNN GGESKSSSML 600 NLMTEGWDNS PSLGSSPTGV LQKTAFGSFS NSSTGSSPRT ENHKTNEGGG GGSSQCSDRF 660 VNSSSSLPSV *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDFGVVGLDG GVVVVGSSDT SGFSSLAAAA ASSDAETTKQ KWYESVSGFI HKQERSASVA  60
APQEQDDDDG VGGGGGGGGD EDLRTSKLLK TSDHLSSSTS SSTKGFLFPH RHSASLLRST  120
NSSPFFLSDS NQNHHHQMLC FSSPKTESFP LDKTSSLSAV SPNLYHSSAP RNAGCNYGGL  180
NGGSMHGSSF IGVRAPFTPS QWMELEQQAL IYKYITANVP VPSYLLIPIR KAFESAGFSA  240
FSGGFLRPVG WGSFNMGFSN SSDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR  300
SRKPVEGQAG HSHSVAGASN ITTATAATKL ISSSASTAAV PCNGSPNSLS FANQHFKNLQ  360
RPGSHPPPSS AAAQINRMLI TNKENGGIGL LDSTTTSGLS VLSPSIDIKH SKQLPFAIQK  420
QQNPFEESPR GTEFGLVPSD FLLGSSQKSS SLMNYRGFNP SEGIASTQES AESHHSLRQF  480
FNNWPKNQPD SSSVSWSNSN LDPQSDRTQL SISIPMATSD FRSSTSSPAN DKLTLSPLKS  540
AQELDPIQMG LGVGNVMDEP NNRQANWIPI SWESSMGGPL GEVLNSTNNN GGESKSSSML  600
NLMTEGWDNS PSLGSSPTGV LQKTAFGSFS NSSTGSSPRT ENHKTNEGGG GGSSQCSDRF  660
VNSSSSLPSV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649553.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBL	A0A0A0LR18	0.0	A0A0A0LR18_CUCSA; Uncharacterized protein
STRING	XP_004171939.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-93	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.395430.2
Entrez Gene	101202772

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]