PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.395430.3

Common Name

Csa_2G354030, LOC101202772

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 489aa MW: 52191.6 Da PI: 8.9634

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.395430.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.5	1.3e-24	81	125	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cucsa.395430.3 81 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 125 79****************************************985 PP
2	QLQ	60.1	6.3e-21	12	47	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Cucsa.395430.3 12 PFTPSQWMELEQQALIYKYITANVPVPSYLLIPIRK 47 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.3E-12	11	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.702	12	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.9E-15	12	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	81	125	IPR014977	WRC domain
Pfam	PF08879	5.5E-21	82	124	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MHGSSFIGVR APFTPSQWME LEQQALIYKY ITANVPVPSY LLIPIRKAFE SAGFSAFSGG 60 FLRPGTVGWG SFNMGFSNSS DPEPGRCRRT DGKKWRCSRD AVADQKYCER HMNRGRHRSR 120 KPVEGQAGHS HSVAGASNIT TATAATKLIS SSASTAAVPC NGSPNSLSFA NQHFKNLQRP 180 GSHPPPSSAA AQINRMLITN KENGGIGLLD STTTSGLSVL SPSIDIKHSK QLPFAIQKQQ 240 NPFEESPRGT EFGLVPSDFL LGSSQKSSSL MNYRGFNPSE GIASTQESAE SHHSLRQFFN 300 NWPKNQPDSS SVSWSNSNLD PQSDRTQLSI SIPMATSDFR SSTSSPANDK LTLSPLKSAQ 360 ELDPIQMGLG VGNVMDEPNN RQANWIPISW ESSMGGPLGE VLNSTNNNGG ESKSSSMLNL 420 MTEGWDNSPS LGSSPTGVLQ KTAFGSFSNS STGSSPRTEN HKTNEGGGGG SSQCSDRFVN 480 SSSSLPSV*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MHGSSFIGVR APFTPSQWME LEQQALIYKY ITANVPVPSY LLIPIRKAFE SAGFSAFSGG  60
FLRPGTVGWG SFNMGFSNSS DPEPGRCRRT DGKKWRCSRD AVADQKYCER HMNRGRHRSR  120
KPVEGQAGHS HSVAGASNIT TATAATKLIS SSASTAAVPC NGSPNSLSFA NQHFKNLQRP  180
GSHPPPSSAA AQINRMLITN KENGGIGLLD STTTSGLSVL SPSIDIKHSK QLPFAIQKQQ  240
NPFEESPRGT EFGLVPSDFL LGSSQKSSSL MNYRGFNPSE GIASTQESAE SHHSLRQFFN  300
NWPKNQPDSS SVSWSNSNLD PQSDRTQLSI SIPMATSDFR SSTSSPANDK LTLSPLKSAQ  360
ELDPIQMGLG VGNVMDEPNN RQANWIPISW ESSMGGPLGE VLNSTNNNGG ESKSSSMLNL  420
MTEGWDNSPS LGSSPTGVLQ KTAFGSFSNS STGSSPRTEN HKTNEGGGGG SSQCSDRFVN  480
SSSSLPSV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143032.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBL	A0A0A0LR18	0.0	A0A0A0LR18_CUCSA; Uncharacterized protein
STRING	XP_004143032.1	0.0	(Cucumis sativus)
STRING	XP_004171939.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-92	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.395430.3
Entrez Gene	101202772

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]