PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.396070.3

Common Name

Csa_2G357210, LOC101223043

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 356aa MW: 37646.1 Da PI: 10.2376

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.396070.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	19.9	1.6e-06	333	353	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ Cucsa.396070.3 333 RRQRRMIKNRESAARSRARKQ 353 79******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-5	326	353	No hit	No description
CDD	cd14707	1.17E-12	333	354	No hit	No description
PROSITE pattern	PS00036	0	336	351	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNFKDFGNDP SGGNGGGGGR PPANYPLARQ SSIYSMTFDE FQSMGSIGKD FGSMNMDELL 60 KNIWSAEEMQ TMASSAAAVG KEGGGSAGGS SGYLQRQGSL TLPRTLSQKK VDEVWKDIIN 120 EHASAKDGAT LAPNLQQRQQ TLGEVTLEEF LFRAGVVRED TQVTANPNNG GFFGNNTGFG 180 IAFQRQPKVP ENNNHIQIQS SNLSLNANGV RAHQPQPIFP KQATLTYGSQ LTLPSDAQLA 240 SPGIRGGIMG IADQGLNTNL MQGTALQGGR MGVVNIAAAP LPIATESPGN QLSSDGIGKS 300 NGDTSSVSPV PYALNGGIRG RRGNGIVDKV VERRQRRMIK NRESAARSRA RKQVI*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNFKDFGNDP SGGNGGGGGR PPANYPLARQ SSIYSMTFDE FQSMGSIGKD FGSMNMDELL  60
KNIWSAEEMQ TMASSAAAVG KEGGGSAGGS SGYLQRQGSL TLPRTLSQKK VDEVWKDIIN  120
EHASAKDGAT LAPNLQQRQQ TLGEVTLEEF LFRAGVVRED TQVTANPNNG GFFGNNTGFG  180
IAFQRQPKVP ENNNHIQIQS SNLSLNANGV RAHQPQPIFP KQATLTYGSQ LTLPSDAQLA  240
SPGIRGGIMG IADQGLNTNL MQGTALQGGR MGVVNIAAAP LPIATESPGN QLSSDGIGKS  300
NGDTSSVSPV PYALNGGIRG RRGNGIVDKV VERRQRRMIK NRESAARSRA RKQVI*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142865.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_011649580.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-102	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A0A0LL86	0.0	A0A0A0LL86_CUCSA; Uncharacterized protein
STRING	XP_004142865.1	0.0	(Cucumis sativus)
STRING	XP_004173635.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.2	2e-85	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Cucsa.396070.3
Entrez Gene	101223043

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]