PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.397930.5
Common NameCsa_4G106850, LOC101216863
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family E2F/DP
Protein Properties Length: 348aa    MW: 38327.7 Da    PI: 5.4777
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.397930.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2793175271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Cucsa.397930.5  93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.0E-1313347IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.9E-4688181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-3592175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2594175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-2195176IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.35E-43180283IPR014889Transcription factor DP, C-terminal
SMARTSM011382.9E-69182345IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.44E-42182294No hitNo description
PfamPF087813.8E-41183290IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGTRTQQPSR EDDDDDLPSG PGATTISGQS VSMSGSVGSP SSRSEQTMAT PASDNTFLRL  60
NNLDIHGDEA GSQGPTANVK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP GNSVASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  180
VNDIEELKAE RLGLRNRIEK KAAYLQELEE QYVGLQNLIQ RNEQLFNSEN APSGGVSLPF  240
ILVQTRPHAT VEIEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCNRPQ CDNTAQNFTP  300
DGGEGSSMSG MYQPPHIPIP SLSNTPVRTP TSPPLPGIIK ARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3686180193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818701e-115LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132611e-115LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137174.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-160DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S3C2420.0A0A1S3C242_CUCME; transcription factor-like protein DPB isoform X2
STRINGXP_004137174.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-150Transcription factor DP
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]