PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000127

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 230aa MW: 25491.5 Da PI: 7.6279

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000127	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.2	4.6e-28	23	118	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e +r ++ ++s +++ ++l DCAR_000127 23 RWTRQEILVLIQGKRVAENRVRRGRmsgpafgsgqAVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETGReAEATESFWVMRNDL 118 8*******************986666677777588*****************************************9445555667777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-5	23	89	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.353	23	90	IPR017877	Myb-like domain
Pfam	PF13837	9.3E-13	23	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEAAETEPPS AGDEANRVAR LPRWTRQEIL VLIQGKRVAE NRVRRGRMSG PAFGSGQAVE 60 PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKIKEWE TGREAEATES FWVMRNDLRR 120 EKKLPGFFDR EVYDILDSSD DNAAAANPNP LPLPPPPAVF DSGRSAAADD GLFSDSDQQH 180 HDHDIVNPPP LALPLPSTSG KQQQHLPQQQ ASAQGPFLIF IVTSSYFSY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017228080.1	1e-170	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-77	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A175Y9A6	1e-169	A0A175Y9A6_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_2461.1	9e-84	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-73	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_000127

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]