PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000215
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 178aa    MW: 19858.1 Da    PI: 8.4977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000215genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-101452148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd+ l+ +v++  ++        ++ gRt++++k++w+k+l
      DCAR_000215 14 RGQWSPEEDLVLASYVQENANH--------LP-GRTDNDIKNHWNKHL 52
                     89*****************866........**.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.503956IPR017930Myb domain
SMARTSM007174.7E-51354IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-101360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-121453IPR009057Homeodomain-like
PfamPF002491.7E-81452IPR001005SANT/Myb domain
CDDcd001677.44E-91752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRPLMGKES VASRGQWSPE EDLVLASYVQ ENANHLPGRT DNDIKNHWNK HLKKIAEITQ  60
DNYSDKHRYG SSSNVTTNAR HQAPSHTTTL PLVSLGLRSP PSTVATGPLL SPDCMSFKSS  120
CGRNLRAHRS LADPANHDQF RSQAAPVTPT FSYPHEPYVF NCENIAIWLQ MWNKQDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215454.11e-107PREDICTED: transcription factor MYB30-like isoform X1
RefseqXP_017228148.11e-107PREDICTED: transcription factor MYB30-like
TrEMBLA0A175Y9701e-131A0A175Y970_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-08myb domain protein 61