PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000361
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 233aa    MW: 25281.5 Da    PI: 7.1132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000361genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.46.2e-304107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+ lr++C++dC + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e
  DCAR_000361   4 SCNGCRALRKGCSDDCSIKPCLqwiksPDSQAHATVFLAKFYGRAGLLNLVNTGPTHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQDAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  ++l ++
  DCAR_000361 102 AVLKGS 107
                  988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4173109IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRTSCNGCRA LRKGCSDDCS IKPCLQWIKS PDSQAHATVF LAKFYGRAGL LNLVNTGPTH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVLKGSPIT KIASETAETN  120
DGPPLKAYDI RHIPKDDNSS GSNQLHRVRN RCRFKKSGAK TQASSGWVRP EDEYTRSPSH  180
ESTLSHLSEV AINVEASKNL ACADTAEPEP EGSAHFEADG EIELELTLGL SI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228227.11e-173PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8863e-92LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A175YB791e-172A0A175YB79_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000329381e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-94LOB domain-containing protein 41