PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000385
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 300aa    MW: 33027.4 Da    PI: 9.7518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000385genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  +Ed ll ++++++G g W++++r+ g++R++k+c++rw++yl
      DCAR_000385 17 KGAWGSDEDALLRKCIEKYGEGKWHLVPRRAGLNRCRKSCRLRWLNYL 64
                     799*******************************************97 PP
2Myb_DNA-binding39.11.8e-1270113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l  +++k+lG++ W++Ia +++ gRt++++k++w++
      DCAR_000385  70 RGDFAADEVDLMMRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNT 113
                      677889999*************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9211168IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-201366IPR009057Homeodomain-like
SuperFamilySSF466893.95E-2615111IPR009057Homeodomain-like
SMARTSM007171.3E-131666IPR001005SANT/Myb domain
PfamPF002491.2E-141764IPR001005SANT/Myb domain
CDDcd001678.04E-101964No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2067119IPR009057Homeodomain-like
PROSITE profilePS5129416.32669119IPR017930Myb domain
SMARTSM007174.1E-1069117IPR001005SANT/Myb domain
PfamPF002497.5E-1170113IPR001005SANT/Myb domain
CDDcd001671.61E-775115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MHPKALKSSS NPLKLRKGAW GSDEDALLRK CIEKYGEGKW HLVPRRAGLN RCRKSCRLRW  60
LNYLRPTIKR GDFAADEVDL MMRLHKLLGN RWSLIAGRLP GRTANDVKNF WNTNVQKKLT  120
TSSNHGQTEV VKAQEVVNKN QTSNAGTSAA TTHVVVKPLP RTLSKGTSVP CYNPNAIGHK  180
LSPWPGGMVY NKISSSNNNN NSCMAMNKTL SPAAALPDQD GTEWWKNLFA EIGIQGQEEG  240
SLEGHLVASS SGSENLEAER GLIRKMDESF APATEAGLVG DDGRSCWSDI WDLLNLDYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22151215110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228240.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-62MY113_ARATH; Transcription factor MYB113
TrEMBLA0A175YA440.0A0A175YA44_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]