PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000420

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 569aa MW: 62742 Da PI: 7.8612

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000420	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	134	156	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C+ffa G C+ G +C+F+H+ DCAR_000420 134 TVPCKFFAS-GNCRNGKSCRFSHD 156 89*5555.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-6	131	157	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.84	131	158	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-6	134	156	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	134	156	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-5	134	157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MSGSGHRRPS KWDLEEVSRD YHHSRDPIGP GSERPSNRES QPRWHSREGN YKVARDSLDD 60 TVLWDGESTM SPGLDDWRQQ KRKYSYESSR GISRRSRSRS KSPGHRSERP GVNDRFGRIA 120 SFDHRNHEPC RISTVPCKFF ASGNCRNGKS CRFSHDDQTR DSFSNYKSND YRQGVDSRAN 180 MSPLREGSKW SGSASHFNLP KHCGNKNESL GEQRVMRSSV GGSAPGDNRL MAHEMDIDEA 240 TTNNQSNDLG LTKPSSSVMG ASKSRGTALH GVDIEGSTTH TEGHLPDLIG TSRKPDVLDT 300 VKSEATSSNQ CVMSTEKFSD LTRSLAQLLG DGKQLPELYA ALNASNALGF MQSSVADPDV 360 FPASSSSQYD PVNDSMELIK SVISEQPDGI ALQSNLPFTG KPSVDGLNGT HCKDVELNDN 420 SHQSSEKHEF GDCENEEQGV VKAEDKKEGQ EGSKLSDNER DDKADGGDKA DEKKKNSDGK 480 NLRAFKFSLA EFVKELLKPT WKAGKLNKES HKTIVKKVVD KVTSSVQGSQ IPQTQEKIDS 540 YLSASKPKLS KLIQAYVDKV QKENPKVA*

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MSGSGHRRPS KWDLEEVSRD YHHSRDPIGP GSERPSNRES QPRWHSREGN YKVARDSLDD  60
TVLWDGESTM SPGLDDWRQQ KRKYSYESSR GISRRSRSRS KSPGHRSERP GVNDRFGRIA  120
SFDHRNHEPC RISTVPCKFF ASGNCRNGKS CRFSHDDQTR DSFSNYKSND YRQGVDSRAN  180
MSPLREGSKW SGSASHFNLP KHCGNKNESL GEQRVMRSSV GGSAPGDNRL MAHEMDIDEA  240
TTNNQSNDLG LTKPSSSVMG ASKSRGTALH GVDIEGSTTH TEGHLPDLIG TSRKPDVLDT  300
VKSEATSSNQ CVMSTEKFSD LTRSLAQLLG DGKQLPELYA ALNASNALGF MQSSVADPDV  360
FPASSSSQYD PVNDSMELIK SVISEQPDGI ALQSNLPFTG KPSVDGLNGT HCKDVELNDN  420
SHQSSEKHEF GDCENEEQGV VKAEDKKEGQ EGSKLSDNER DDKADGGDKA DEKKKNSDGK  480
NLRAFKFSLA EFVKELLKPT WKAGKLNKES HKTIVKKVVD KVTSSVQGSQ IPQTQEKIDS  540
YLSASKPKLS KLIQAYVDKV QKENPKVA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017228264.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBL	A0A175Y9P0	0.0	A0A175Y9P0_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5255	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-10	C3H family protein

Link Out ? help Back to Top
Phytozome	DCAR_000420